Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015908700.1_cds_XP_016458872.1_52462
CDS Infomation

[gene=LOC107782504] [db_xref=GeneID:107782504] [protein=germacrene C synthase-like] [protein_id=XP_016458872.1] [location=complement(join(82433..82726,83074..83322,83434..83572,83690..83908,84187..84559,85298..85574,86260..86502))] [gbkey=CDS]
Sequence

ATGAGTCAATCAATTTCTCCAATCTTTCCTCGCTTTGCAAAATTTCAGTCGAATATTTGG
AGATGCAGTACTTTTGAACTCAGAGTTATACACTCATCATATGCCTCTATTGGAGGGAGG
AGAAAAGAGAGAGAAAGAAGAATGAAGCGAGCAATGAATCCTTCTTCAAGCTCGCGTCAT
TTGGCAGATTTTCACTCAACCATTTGGGGTGACCATTTTCTCTCCTACAATTCTGAAATA
ACAGAAATTACTAGCCTAGAGAAAAATGAACATGAAGAGTTAAAAGAAATAGGTAGGAAA
ATGTTGGTAGAAACTCCAGATAATAGTACACAAAAACTTGTCTTGATTGACACAATTCAA
AGATTGGGATTAGCATATCATTTCAATGATGAGATTGAAAACTCCATTCAAAACATCTTT
TATTTGTCCCAAAATAGTGAAGAAGACGATGAACACAACCTTTATGTTGTTGCTCTTCGT
TTTCGACTTGCGAGGCAACAAGGAAATTACATGTCTTCAGATGTGTTCAAGCAATTCACT
AACCATGACGGAAAATTCAAGGAAAATCATACTAATGATGTTCGAGGATTACTGAGTTTG
TATGAAGCAGCACATATGAGCGTGCACGACGAGGAAATTCTAGAAGAATCTCTTATCTTT
ACCACCACTCATCTCGAGTCCATGATCCCGAATTTGAGTAACTCGCTTAAGGTACAAGTT
ACTGAAGCCTTAAGCCAGCCTATTCGCAAAACTATACCAAGGGTGGGAGCAAGGAAATAC
ATATACATTTATGAAAATATTGAAGCACATAATGATTTGCTTTTGAAATTTGCAAAGTTG
GACTTTAACATGTTACAAAAGCTTCACCGGAAAGAGCTTAACGAGCTAACAAGCTGGTGG
AAAGATTTGGATTTTGCAAACAAATTTCCATATGCAAAGGACAGATTGGTAGAAGCTTAC
TTTTGGATGGTGGGAATATATTTTGAACCTCAGTATAGTCGTTCAAGAAGAATGATAACA
AAAGTAGTCAAAACTAACTCCATCATTGATGACACTTATGATGCTTATGCAACTTTTGAT
GAGCTTGTGCTTTTCACGGATGCTATCCAAAGATGGGACATAGGTGCCATGGATTCATTA
CCGACATATCTGAGACCTATTTATCAAGGCCTTCTCGACGTTTTCAATGAAATGGAAGAA
GTATTGGCCAAAGAAGGTAAAGCAGATCGCATCTACTATGCGAAAAAAGAGATGAAAAAG
TTGGTGGCAACCTATTTTAAGGAAGCTGAATGGTTGAATGCTAACTACATTCCAAAATGT
GAGGAGTATATGAAAAATGGACTTGTAAGCTGTACGGGTATGATGTATGGAACAATTTCT
TTGGTTGTTATGGAAGAATTTATAACAAAAGAGACTTTTGAATGGTTGGCAAATGAACCT
TTGATTCTTCGAGCTTCATCAACAATTTGCAGATTAATGGACGATATTGCCGATCACGAA
GTTGAACAACAAAGAGGACATGTTGCTTCATTTGTGGAGTGCTACATGAAAGAATATGGA
GTTTCAAAGCAAGAAGCATATGTTGAGATGTGGAAAAACATTACAAATGCGTGGAAATGC
ATAAATAAGGAACTCCTTCGCCCTACTGCAGTACCAATGTTTGTCCTTGAACGAACTTTA
AATTATACAAGATTGGTTGATACATTTTTCAAAGATGATGATGGATACACAAATCCCAAA
TCCAAAGTTAAAGACCTAATTACTTTGTTGTTTGTCGAATCTATCGACATATAA

Peptide Sequence

PEP ID

XP_016458872.1
PEP Infomation

PREDICTED: germacrene C synthase-like [Nicotiana tabacum]
Sequence

MSQSISPIFPRFAKFQSNIWRCSTFELRVIHSSYASIGGRRKERERRMKRAMNPSSSSRH
LADFHSTIWGDHFLSYNSEITEITSLEKNEHEELKEIGRKMLVETPDNSTQKLVLIDTIQ
RLGLAYHFNDEIENSIQNIFYLSQNSEEDDEHNLYVVALRFRLARQQGNYMSSDVFKQFT
NHDGKFKENHTNDVRGLLSLYEAAHMSVHDEEILEESLIFTTTHLESMIPNLSNSLKVQV
TEALSQPIRKTIPRVGARKYIYIYENIEAHNDLLLKFAKLDFNMLQKLHRKELNELTSWW
KDLDFANKFPYAKDRLVEAYFWMVGIYFEPQYSRSRRMITKVVKTNSIIDDTYDAYATFD
ELVLFTDAIQRWDIGAMDSLPTYLRPIYQGLLDVFNEMEEVLAKEGKADRIYYAKKEMKK
LVATYFKEAEWLNANYIPKCEEYMKNGLVSCTGMMYGTISLVVMEEFITKETFEWLANEP
LILRASSTICRLMDDIADHEVEQQRGHVASFVECYMKEYGVSKQEAYVEMWKNITNAWKC
INKELLRPTAVPMFVLERTLNYTRLVDTFFKDDDGYTNPKSKVKDLITLLFVESIDI

Transcript Sequence

Gene sequence data has not been registered.